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The BGD data mining resource, BovineMine, and the BGD Lookup Tools currently provide only the UMD3.1 assembly, but will be updated in Fall 2018. BovineMine integrates the UMD3.1 genome assembly with a variety of data sources, including genes, proteins, orthologs, pathways, gene ontology, gene expression, interactions, variants, QTL and publications. The goal of BovineMine is to accelerate genomics analysis by enabling researchers without scripting skills to create and export customized annotation datasets merged with their own research data for use in downstream analyses. BovineMine allows researchers to leverage the curated gene pathways of model organisms (e.g. human, mouse and rat) based on orthology, and is especially useful for GO and pathway analyses in conjunction with GWAS and QTL studies. BovineMine also includes reference genomes of sheep and goat so researchers can leverage information across ruminants. The next release of BovineMine will include both the new ARS-UCD1 Read more↗

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Updated8 months ago
Checked5 months ago
Keywordsbgd in eukaryotic genomic databases preprint pdf
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